VMD: GPU-Accelerated Visualization and Analysis of Petascale
U. Illinois at Urbana-Champaign. GPU Accelerated Trajectory Analysis and Visualization in VMD. GPU-Accelerated Feature. Peak speedup vs. single CPU core.
GPU Accelerated Molecular Dynamics Simulation, Visualization
May 19, 2014 ... GPU accelerated molecular dynamics simulations, visualization, and analysis. 2 ... units (GPUs) to accelerate simulation, visualization and analysis. You ... orbitals, VMD's GPU algorithm obtains a 125× speedup over the CPU.
VMD: enabling preparation, visualization, and analysis of petascale
NAMD and VMD Use GPUs and Petascale Computing to Meet. Computational .... GPU-Accelerated Analysis and Visualization of Large Structures Solved by.
Analysis and Visualization Algorithms in VMD
Visualization and analysis of molecular dynamics simulations, sequence data ... and Visualization in VMD. GPU-Accelerated Feature. GPU. Speedup. Molecular ...
Using GPUs to Supercharge Visualization and Analysis of Molecular
Feb 27, 2014 ... CUDA GPU-Accelerated Trajectory Analysis and Visualization in VMD. VMD GPU-Accelerated Feature or. GPU Kernel. Exemplary speedup vs.
GPU-Accelerated Analysis of Petascale Molecular Dynamics
Jun 11, 2012 ... Large-scale parallel analysis and visualization via distributed memory ... Supports GPU-accelerated clusters and supercomputers. VMD. VMD.
S6253—VMD: Petascale Molecular Visualization and Analysis with
Apr 5, 2016 ... Supports GPU-accelerated Cray XK7 nodes for both visualization and analysis: – GPU accelerated trajectory analysis w/ CUDA. – OpenGL and ...
Visualization and Analysis of Petascale Molecular Simulations with
Mar 25, 2014 ... NAMD and VMD Use GPUs and Petascale Computing to Meet .... GPU- accelerated analysis and visualization of large structures solved by.
In-Situ Visualization and Analysis of Petascale Molecular Dynamics
May 17, 2012 ... Molecular Visualization and Analysis. Challenges for ... Analysis of. Petascale Molecular Simulations with VMD ... Large-scale parallel analysis and visualization via distributed memory ... GPU Accelerated Trajectory Analysis.
Early Experiences Scaling VMD Molecular Visualization - XSEDE
GPU-acceleration features, and collectively for large analysis jobs that typically ... VMD analysis and visualization tasks involve processing data sets that can be ...
Accelerating VMD/Tachyon with OptiX - GPU Technology Conference
Mar 27, 2014 ... Increased GPU acceleration for visualization of petascale .... Scaling VMD Molecular Visualization and Analysis Jobs on Blue Waters.
Accelerating Molecular Modeling Applications with Graphics
Aug 12, 2015 ... Increased GPU acceleration for visualization of petascale molecular dynamics ... memory transfers. • Directly operate on VMD internal molecular scene, ... Same scripting, analysis, atom selection, and rendering features are ...
GPU-Accelerated Molecular Visualization on Petascale
features of VMD, a widely used molecular visualization and analysis tool, for GPU -accelerated petascale computers. We discuss early experiences adapting ray ...
Download PDF - Nvidia
Nov 14, 2010 ... Heterogeneous GPU Computing for Molecular Modeling ... Examples of CUDA kernels in the VMD ... Visualization and analysis of molecular dynamics simulations, ..... GPU-accelerated molecular modeling coming of age.
here - Nvidia
biomolecular modeling, simulation, and analysis required to per- form the ... ration of CUDA-based GPU-acceleration into NAMD and VMD . Research conducted ... VMD  was one of the first molecular visualization tools to em- ploy GPUs ...
VMD User's Guide - MIT
Jan 29, 2012 ... The VMD User's Guide describes how to run and use the molecular visualization and analysis program VMD. ... 2.2 Multi-core CPUs and GPU Acceleration . ...... computationally demanding visualization and analysis tasks.
Visualization of Energy Conversion Processes in a Light - SC14
tion techniques and rendering approaches within VMD –. . .... GPU- accelerated analysis and visualization of large structures solved by molecular ...
GPU-Accelerated Computation and Interactive - Elsevier Store
algorithms in VMD , a popular molecular visualization and analysis tool. VMD ( Visual Molecular ... A motivation for using GPU acceleration in VMD is to make.
Asynchronous In Situ Processing with Gromacs: Taking - HAL-Inria
Jul 26, 2015 ... strategies to the case of in situ analytics running on a GPU and study ... live visualization, statistics generation, feature tracking, simulation monitoring, ... situ analytics to accelerate the analysis phase and therefore shorten the time to ... as NAMD  or Gromacs  have been adapted to benefit from these ...
Unlocking the Full Potential of the Cray XK7 - Cray User Group
analysis and visualization into a single-pass, more efficiently operating on massive ... VMD GPU-accelerated OpenGL rendering of the 64-million- atom HIV- 1 ...
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