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BioPerf: A Benchmark Suite to Evaluate High-Performance
BioPerf: A Benchmark Suite to Evaluate High-Performance Computer. Architecture on Bioinformatics Applications. David A. Bader. College of Computing.
BioPerf-IIWSC05.pdf

An Open Benchmark Suite for Evaluating Computer - BioPerf
effectively deliver high-performance on computational biology applications play a .... benchmark suites is SPEC (Standard Performance Evaluation. Corporation) ...
Bader-SPEC2006.pdf

MineBench: A Benchmark Suite for Data Mining Workloads
available benchmark suite containing fifteen representative data mining applications ... Second, high performance computer architectures optimized for data ... to be evaluated. For these ... In Bioperf, a few applications have been parallelized ...
NarOzi06A.pdf

An Architectural Characterization Study of Data Mining and
MineBench, a publicly available benchmark suite containing ... Subsequently, we evaluate the MineBench applications .... plash [17], and BioPerf [18] all contain several applications ... for high-performance data mining, since they can be built.
OziNar06A.pdf

PBB: A Parallel Bioinformatics Benchmark Suite for Shared Memory
and medicine industry where the demand on high perfor- mance computing system .... ing PBB a good tool in evaluating the performance of shared memory machines. ... etry analysis. BioPerf[7] is another bioinformatics benchmark suite which.
pbb.pdf

Cycle-Accurate Performance Modelling in an Ultra-Fast - CiteSeerX
Simulators play an important role in the design of today's high performance ... We have evaluated our performance modelling methodology against the industry standard EEMBC, COREMARK, and BIOPERF benchmark suites for our ISS of the ...
HIPEAC11_CYCLE_ISS_BOHM.pdf

Comparing Benchmarks Using Key Microarchitecture - Elis
compare the behavioral characteristics of these benchmark suites against well- known ... and BioPerf [5] for bioinformatics workloads, etc. The key ...... to evaluate high-performance computer architecture on bioinformatics applications,” in ...
iiswc06-hoste.pdf

Comparing Benchmarks Using Key - Semantic Scholar
compare the behavioral characteristics of these benchmark suites against well- known ... and BioPerf [5] for bioinformatics workloads, etc. The key ...... to evaluate high-performance computer architecture on bioinformatics applications,” in ...
7fd3e0ccefb6a1578b91e49f6e0e773ae5d5.pdf

A Principled Kernel Testbed for Hardware/Software Co-Design
these isolated and iterative improvements to performance may miss superior ..... aBench [19] for multimedia applications, BioPerf [3] for computational .... V. BioPerf: a benchmark suite to evaluate high-performance computer archi- tecture on ...
hotpar10-dwarfs.pdf

View PDF - CiteSeerX
This paper evaluates the performance of bioinformatics applications on the ..... BioPerf: A benchmark suite to evaluate high-performance com- puter architecture  ...
3937afcfd72543fd4eb20a8461bd051e4ccc.pdf

Download as a PDF - CiteSeerX
Jun 25, 2007 ... 1 Computational Biology and High-Performance Computing. With the discovery ...... BioPerf: A benchmark suite to evaluate high- performance ...
90f4630a875cbf028d42a4b1c5c7033c7f6e.pdf

Locality and Parallelism Optimization for Dynamic - SC06
new cache oblivious scheme to enhance its performance on memory hierarchy architectures. ...... Bioperf: A benchmark suite to evaluate high-performance com-.
pap166.pdf

AbiCV - SourceForge
Jul 21, 2014 ... Thesis: High Performance Big Data Genome Analytics using R (Score 96%) .... `` BioPerf: A Benchmark Suite to Evaluate High-Performance ...
2

Re-Defining K-Means by Increasing Number of Clusters - IJARCSSE
It may be used in data mining to evaluate similarities among data, to build a set of ..... BioPerf: A benchmark suite to evaluate high-performance computer.
V3I8-0337.pdf

Here
A ubiquitous problem in performance evaluation and benchmark- ing is anticipating the ..... 161. B.2 Overview of the workloads in the BioPerf benchmark suite .
phd_dissertation_kehoste_UGent.pdf

A Case Study on the Design Trade-off of a Thread Level Data Flow
Jun 29, 2011 ... W that comes from the BioPerf [7] benchmark suite. This version of ..... to evaluate high-performance computer architecture on bioinformatics.
Yu11b.pdf

Power and Performance of Read-Write Aware Hybrid Caches with
SRAM has high static power, while MRAM and PRAM have very low static ... 1: Read/write ratio for one cache line in omnetpp benchmark. single cache line for ...
07.2_2.PDF

Cache Index-Aware Memory Allocation
pact application performance because of an increase in the cache conflict miss rate ...... fered extremely high level-2 cache (L2) miss rates. ..... Bioperf: a benchmark suite to evaluate high-performance computer architecture on bioinformatics.
ismm2011-CIF.pdf

Criticality-Based Optimizations for Efficient Load Processing
the performance of load value prediction and instruction steering for clustered ..... BioBench [1] and BioPerf [3]. .... benchmark suites as well as present per benchmark results ..... mark Suite to Evaluate High-Performance Computer Architecture.
hpca2009-lcp.pdf

Memory Performance and Scalability of Intel's and AMD's Dual-Core
benchmarks, which measure system latency and band- width of data movement ... select blastp and hmmpfam from the BioPerf suites [6], ..... The BioPerf suite has emerging Bio- ..... mark Suite to Evaluate High-Performance Computer Archi- .
ipccc07.pdf

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